miRBase entry: sko-mir-2012

Stem-loop sko-mir-2012


Accession
MI0010265
Description
Saccoglossus kowalevskii sko-mir-2012 precursor miRNA
Gene family
MIPF0000720; mir-2012


Sequence

auauuacuuggUAGUACUGGCAUAUGGACAUUGgugauuuaacucAAUGUUCAUAUUUCAGUAUUUCcaagugagau
...((((((((.((((((((.((((((((((((((......)).)))))))))))).)))))))).))))))))...

Structure
aua        U        C            -  ga 
   uuacuugg AGUACUGG AUAUGGACAUUG gu  u
   |||||||| |||||||| |||||||||||| ||   
   agugaacC UUAUGACU UAUACUUGUAAc ca  u
uag        U        U            u  au 


Annotation confidence Not enough data
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Genome context
GL016179.1: 444445-444521 [+]

Database links

Mature sko-miR-2012-5p

Accession MIMAT0009736
Description Saccoglossus kowalevskii sko-miR-2012-5p mature miRNA
Sequence 12 - UAGUACUGGCAUAUGGACAUUG - 33
Evidence experimental
454 [1]

Mature sko-miR-2012-3p

Accession MIMAT0019164
Description Saccoglossus kowalevskii sko-miR-2012-3p mature miRNA
Sequence 46 - AAUGUUCAUAUUUCAGUAUUUC - 67
Evidence experimental
454 [2]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68

  2. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27