Stem-loop spu-mir-2001

Accession

MI0010269

Description

Strongylocentrotus purpuratus spu-mir-2001 precursor miRNA

Gene family

MIPF0000711; mir-2001

Literature search

1 open access papers mention spu-mir-2001
(1 sentences)

Sequence

uugucaAUGUGACCGAUAUAAUGGGCAUgaauaaucaugaucaauguccaguauagcggugacaaugagau
.(.(((.(((.((((.((((.(((((((...............))))))).)))).)))).))).))).).

Structure

u g   A   G    A    A       gaauaa 
 u uca UGU ACCG UAUA UGGGCAU      u
 | ||| ||| |||| |||| |||||||      c
 a agu aca uggc auau accugua      a
u g   a   g    g    g       acuagu 

Annotation confidence Not enough data

Genome context

KN912884.1: 112621-112691 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from spu-mir-2001

Mature spu-miR-2001

• Accession: MIMAT0009740
• Description: Strongylocentrotus purpuratus spu-miR-2001 mature miRNA
• Sequence: 7 - AUGUGACCGAUAUAAUGGGCAU - 28
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68