miRBase entry: spu-mir-2004

Stem-loop spu-mir-2004


Accession
MI0010274
Description
Strongylocentrotus purpuratus spu-mir-2004 precursor miRNA
Gene family
MIPF0002042; mir-2004

Literature search
1 open access papers mention spu-mir-2004
(5 sentences)

Sequence

agaggcuacuugcggaccuuucuguggcugucguguuaagugugauucuaugaagacacuUCACACACAACCACAGGAAGUUuugcacgguagccaug
...(((((((((((((.((((((((((.(((.((((.((((((..(((...))).)))))).))))))).)))))))))).)))))).)))))))...

Structure
aga       -      c          c   c    u      ga   u 
   ggcuacu ugcgga cuuucugugg ugu gugu aagugu  uuc  
   ||||||| |||||| |||||||||| ||| |||| ||||||  ||| a
   ccgaugg acguuU GAAGGACACC ACA CACA Uucaca  aag  
gua       c      U          A   -    C      -g   u 


Annotation confidence Not enough data
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Genome context
KN920588.1: 138611-138708 [-]

Database links

Mature spu-miR-2004

Accession MIMAT0009745
Description Strongylocentrotus purpuratus spu-miR-2004 mature miRNA
Sequence 61 - UCACACACAACCACAGGAAGUU - 82
Evidence experimental
454 [1]

References

  1. PubMed ID: 19196333
    The deep evolution of metazoan microRNAs
    "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
    "Evol Dev (2009) 11:50-68