Stem-loop aqu-mir-2021

Accession

MI0010282

Description

Amphimedon queenslandica aqu-mir-2021 precursor miRNA

Sequence

11364 reads, 65053 reads per million, 9 experiments

aguguuguugaugucCAUGGAAUAUCGGCACCCAUCcaguuaaaaccuucaacgauccacucgugcagcuaugggucccuagacuagcaccagugggugauugugucaggaggugugugaUGGUGGUCGGUGUUUCGUGGAcaccaacaaugcaa
.(((((((((.((((((((((((((((((..(((((........((((((.((((((((((.(((((((((.((...))))).)).)))).))))))).....)))..))))))....)))))..)))))))))))))))))).)))))))))..

Structure

-a         a                  AC     caguuaaa      -a   -----       c    -  -   u  g 
  guguuguug ugucCAUGGAAUAUCGGC  CCAUC        accuuc  acg     auccacu gugc ag cua gg  
  ||||||||| ||||||||||||||||||  |||||        ||||||  |||     ||||||| |||| || ||| || u
  cguaacaac acAGGUGCUUUGUGGCUG  GGUag        uggagg  ugu     uggguga cacg uc gau cc  
aa         c                  GU     ----ugug      ac   guuag       c    a  a   -  c 

Annotation confidence High

Genome context

Unknown

Mature aqu-miR-2021-5p

• Accession: MIMAT0009753
• Description: Amphimedon queenslandica aqu-miR-2021-5p mature miRNA
• Sequence: 16 - CAUGGAAUAUCGGCACCCAUC - 36
• Evidence: experimental ; 454 [1]

Mature aqu-miR-2021-3p

• Accession: MIMAT0009754
• Description: Amphimedon queenslandica aqu-miR-2021-3p mature miRNA
• Sequence: 121 - UGGUGGUCGGUGUUUCGUGGA - 141
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197