Stem-loop nve-mir-2023

Accession

MI0010283

Description

Nematostella vectensis nve-mir-2023 precursor miRNA

Sequence

262230 reads, 184810 reads per million, 24 experiments

gaguugcgugacauaccuguguCUGCCACCUGUAUUUCUAUCAcgucagaugAAAGAAGUACAAGUGGUAGGGaagggugugucgauugacaa
..(((...((((((((((.(.((((((((.(((((((((.((((....).))).))))))))).)))))))).).))))))))))...)))..

Structure

ga   gcg          g g        C         A   - g 
  guu   ugacauaccu u uCUGCCAC UGUAUUUCU UCA c u
  |||   |||||||||| | |||||||| ||||||||| ||| |  
  cag   gcuguguggg a GGAUGGUG ACAUGAAGA Agu g c
aa   uua          a G        A         A   a a 

Annotation confidence High

Genome context

scaffold_294: 142038-142130 [+]

Mature nve-miR-2023-5p

• Accession: MIMAT0009755
• Description: Nematostella vectensis nve-miR-2023-5p mature miRNA
• Sequence: 23 - CUGCCACCUGUAUUUCUAUCA - 43
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2023-3p

• Accession: MIMAT0009756
• Description: Nematostella vectensis nve-miR-2023-3p mature miRNA
• Sequence: 53 - AAAGAAGUACAAGUGGUAGGG - 73
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663