miRBase entry: nve-mir-2024b

Stem-loop nve-mir-2024b


Accession
MI0010286
Description
Nematostella vectensis nve-mir-2024b precursor miRNA
Gene family
MIPF0000697; mir-2024


Sequence

14577 reads, 39023 reads per million, 24 experiments
agugcuacugcuucAAAAUAUCGGUGUUGGGUAAAAggucacauuUUCAACAGUACCGAUAUUGUGAagcacguuugcaaauuaa
..(((.(((((((((.(((((((((((((...((((.......))))...))))))))))))).))))))).))..)))......

Structure
----ag   -u  -       A             GGU    gg 
      ugc  ac ugcuucA AAUAUCGGUGUUG   AAAA  u
      |||  || ||||||| |||||||||||||   ||||  c
      acg  ug acgaAGU UUAUAGCCAUGAC   UUuu  a
aauuaa   uu  c       G             AAC    ac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
scaffold_126: 84223-84307 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from nve-mir-2024b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nve-miR-2024b-5p

Accession MIMAT0009761
Description Nematostella vectensis nve-miR-2024b-5p mature miRNA
Sequence 15 - AAAAUAUCGGUGUUGGGUAAAA - 36
Evidence experimental
454 [1], Illumina [2]

Mature nve-miR-2024b-3p

Accession MIMAT0009762
Description Nematostella vectensis nve-miR-2024b-3p mature miRNA
Sequence 46 - UUCAACAGUACCGAUAUUGUGA - 67
Evidence experimental
454 [1]

References

  1. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197

  2. PubMed ID: 24642861
    Cnidarian microRNAs frequently regulate targets by cleavage
    "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
    "Genome Res (2014) 24:651-663