Stem-loop sequence nve-mir-2024e-1

Accession MI0010289
Previous IDs nve-mir-2024e
Description Nematostella vectensis miR-2024e-1 stem-loop
Gene family MIPF0000697; mir-2024
Stem-loop 
----a a    g    cu                cgc  g      gg 
     c ucag uaga  ugcuucagaguauugg   ug gcaaaa  u
     | |||| ||||  ||||||||||||||||   || ||||||  c
     g aguc gucu  acggagucuuauaacc   ac cguuuu  a
ucaag a    -    uc                auu  a      ac
Get sequence
Deep sequencing
85 reads, 1 experiments
Genome context
Coordinates (JGI1.0) Overlapping transcripts
scaffold_282: 93287-93380 [-]
intergenic
Clustered miRNAs
< 10kb from nve-mir-2024e-1
nve-mir-2024e-2 scaffold_282: 94237-94330 [-]
nve-mir-2024g-2 scaffold_282: 93997-94085 [-]
nve-mir-2024e-1 scaffold_282: 93287-93380 [-]
nve-mir-2024g-1 scaffold_282: 93047-93135 [-]

Mature sequence nve-miR-2024e-5p

Accession MIMAT0009766
Previous IDs nve-miR-2024e*
Sequence

21 -  

agaguauuggcgcugggcaaaa

 - 42

Get sequence
Evidence experimental; 454 [1]

Mature sequence nve-miR-2024e-3p

Accession MIMAT0009767
Previous IDs nve-miR-2024e
Sequence

52 -  

uugcacauuaccaauauucuga

 - 73

Get sequence
Deep sequencing 255 reads, 1 experiments
Evidence experimental; 454 [1]

References

1
PMID:18830242 "Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals" Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP Nature. 455:1193-1197(2008).