Stem-loop nve-mir-2024f

Accession

MI0010290

Description

Nematostella vectensis nve-mir-2024f precursor miRNA

Gene family

MIPF0000697; mir-2024

Sequence

32197 reads, 26770 reads per million, 24 experiments

aaagagcagguagacuugcuucAGAAUAUUGGUACUGGGCAAAAggucacguuUUGCACAUCACCAAUGUUCUGAggcacuucugcugaaggaacuaggaaauuacaaga
....((((((.((...(((((((((((((((((..((.((((((.(...).)))))).))..))))))))))))))))))))))))).......................

Structure

-------------------aaag      u  acu                 AC  G      g u 
                       agcagg ag   ugcuucAGAAUAUUGGU  UG GCAAAA g  
                       |||||| ||   |||||||||||||||||  || |||||| | c
                       ucgucu uc   acggAGUCUUGUAACCA  AC CGUUuu c  
agaacauuaaaggaucaaggaag      -  ---                 CU  A      g a 

Annotation confidence High

Genome context

scaffold_126: 84452-84561 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from nve-mir-2024f

Mature nve-miR-2024f-5p

• Accession: MIMAT0009768
• Description: Nematostella vectensis nve-miR-2024f-5p mature miRNA
• Sequence: 23 - AGAAUAUUGGUACUGGGCAAAA - 44
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2024f-3p

• Accession: MIMAT0009769
• Description: Nematostella vectensis nve-miR-2024f-3p mature miRNA
• Sequence: 54 - UUGCACAUCACCAAUGUUCUGA - 75
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663