Stem-loop nve-mir-2027

Accession

MI0010292

Description

Nematostella vectensis nve-mir-2027 precursor miRNA

Sequence

17872 reads, 15456 reads per million, 24 experiments

aauccgagagccuuaaggcuuGCUUGUUGGUAAUUUUGCAUCUguugcacAUGCGAUUUUACCAAAAUGCAAuucuuaugguucagugaucaggaa
..((((((((((.(((((.((((...(((((((..((((((.((...)).))))))..)))))))...)))).))))).))))).....)).))).

Structure

aa   -  -----     u     c    UUG       UU      C  u 
  ucc ga     gagcc uaagg uuGC   UUGGUAA  UUGCAU Ug  
  ||| ||     ||||| ||||| ||||   |||||||  |||||| || u
  agg cu     cuugg auucu AACG   AACCAUU  AGCGUA ac  
-a   a  aguga     u     u    UAA       UU      c  g 

Annotation confidence High

Genome context

scaffold_241: 295172-295267 [+]

Mature nve-miR-2027-5p

• Accession: MIMAT0009772
• Description: Nematostella vectensis nve-miR-2027-5p mature miRNA
• Sequence: 22 - GCUUGUUGGUAAUUUUGCAUCU - 43
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2027-3p

• Accession: MIMAT0009773
• Description: Nematostella vectensis nve-miR-2027-3p mature miRNA
• Sequence: 51 - AUGCGAUUUUACCAAAAUGCAA - 72
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663