Stem-loop nve-mir-2024g-1

Accession

MI0010293

Description

Nematostella vectensis nve-mir-2024g-1 precursor miRNA

Gene family

MIPF0000697; mir-2024

Sequence

31737 reads, 26627 reads per million, 23 experiments

accaauaagugcuacugcuucAAAAUAUCGGUGUUGGGUAAAaggucaccuuuUAACACAGUACCGAUAUUGUGAagcacguuugcaaa
.........(((.(((((((((.((((((((((((((.(((((((...))))))).).))))))))))))).))))))).))..)))..

Structure

accaauaag   -u  -       A             - G       u 
         ugc  ac ugcuucA AAUAUCGGUGUUG G UAAAagg  
         |||  || ||||||| ||||||||||||| | ||||||| c
         acg  ug acgaAGU UUAUAGCCAUGAC C AUuuucc  
-------aa   uu  c       G             A A       a 

Annotation confidence High

Genome context

scaffold_282: 93047-93135 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nve-mir-2024g-1

Mature nve-miR-2024g-5p

• Accession: MIMAT0009774
• Description: Nematostella vectensis nve-miR-2024g-5p mature miRNA
• Sequence: 22 - AAAAUAUCGGUGUUGGGUAAA - 42
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2024g-3p

• Accession: MIMAT0009775
• Description: Nematostella vectensis nve-miR-2024g-3p mature miRNA
• Sequence: 54 - UAACACAGUACCGAUAUUGUGA - 75
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663