Stem-loop sequence nve-mir-2024g-1

Accession

MI0010293

Previous IDs

nve-mir-2024g

Description

Nematostella vectensis miR-2024g-1 stem-loop

Gene family

MIPF0000697; mir-2024

Stem-loop

accaauaag   -u  -       a             -gg         
         ugc  ac ugcuuca aauaucgguguug   uaaaaggu 
         |||  || ||||||| |||||||||||||   ||||||| c
         acg  ug acgaagu uuauagccaugac   auuuucca 
-------aa   uu  c       g             aca         

Deep sequencing

274 reads, 1 experiments

Genome context

• Coordinates (JGI1.0): scaffold_282: 93047-93135 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from nve-mir-2024g-1

• nve-mir-2024e-2: scaffold_282: 94237-94330 [-]
• nve-mir-2024g-2: scaffold_282: 93997-94085 [-]
• nve-mir-2024e-1: scaffold_282: 93287-93380 [-]
• nve-mir-2024g-1: scaffold_282: 93047-93135 [-]

Mature sequence nve-miR-2024g-5p

• Accession: MIMAT0009774
• Previous IDs: nve-miR-2024g*
• Sequence: 22 - aaaauaucgguguuggguaaa - 42
• Deep sequencing: 3 reads, 1 experiments
• Evidence: experimental; 454 [1]

Mature sequence nve-miR-2024g-3p

• Accession: MIMAT0009775
• Previous IDs: nve-miR-2024g
• Sequence: 54 - uaacacaguaccgauauuguga - 75
• Deep sequencing: 819 reads, 1 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:18830242 "Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals" Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP Nature. 455:1193-1197(2008).