miRBase entry: nve-mir-2030

Stem-loop nve-mir-2030


Accession
MI0010296
Description
Nematostella vectensis nve-mir-2030 precursor miRNA


Sequence

54384 reads, 44401 reads per million, 24 experiments
acacccacaguauggccguaUAGCAUAACAUUGUAAGAGAUUguaagaaCCUCUUUACAUUGUUGUGCUGUAcggauaugcugaauagu
.......(((((((.(((((((((((((((.((((((((.((.....)).))).))))).))))))))))))))).)))))))......

Structure
acaccca       g               U     -   A  g 
       caguaug ccguaUAGCAUAACA UGUAA GAG UU u
       ||||||| ||||||||||||||| ||||| ||| || a
       gucguau ggcAUGUCGUGUUGU ACAUU CUC aa a
-ugauaa       a               U     U   C  g 


Annotation confidence High
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Genome context
scaffold_507: 85572-85660 [-]

Database links

Mature nve-miR-2030-5p

Accession MIMAT0009780
Description Nematostella vectensis nve-miR-2030-5p mature miRNA
Sequence 21 - UAGCAUAACAUUGUAAGAGAUU - 42
Evidence experimental
454 [1], Illumina [2]

Mature nve-miR-2030-3p

Accession MIMAT0009781
Description Nematostella vectensis nve-miR-2030-3p mature miRNA
Sequence 50 - CCUCUUUACAUUGUUGUGCUGUA - 72
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197

  2. PubMed ID: 24642861
    Cnidarian microRNAs frequently regulate targets by cleavage
    "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
    "Genome Res (2014) 24:651-663