miRBase entry: nve-mir-2032a

Stem-loop nve-mir-2032a


Accession
MI0010298
Description
Nematostella vectensis nve-mir-2032a precursor miRNA
Gene family
MIPF0000736; mir-2032


Sequence

509 reads, 1827 reads per million, 14 experiments
ucgcgagcucaccguugcugUCGCUGCGACAGUUAGCUAGcauuuauugcgAGGUAACUGUUGCAGCAUCCaugacugugaggucaguauu
....((.(((((.((((..(..(((((((((((((.((.(((.....))).)).)))))))))))))..)..)))).))))).))......

Structure
--ucgc  g     c    cu UC             G  A   u 
      ga cucac guug  g  GCUGCGACAGUUA CU Gca u
      || ||||| ||||  |  ||||||||||||| || ||| u
      cu gagug cagu  C  CGACGUUGUCAAU GA cgu a
uuauga  g     u    aC UA             G  g   u 


Annotation confidence High
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Genome context
scaffold_161: 473285-473375 [-]

Database links

Mature nve-miR-2032a-5p

Accession MIMAT0009784
Description Nematostella vectensis nve-miR-2032a-5p mature miRNA
Sequence 21 - UCGCUGCGACAGUUAGCUAG - 40
Evidence experimental
454 [1], Illumina [2]

Mature nve-miR-2032a-3p

Accession MIMAT0009785
Description Nematostella vectensis nve-miR-2032a-3p mature miRNA
Sequence 52 - AGGUAACUGUUGCAGCAUCC - 71
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197

  2. PubMed ID: 24642861
    Cnidarian microRNAs frequently regulate targets by cleavage
    "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
    "Genome Res (2014) 24:651-663