Stem-loop nve-mir-2042

Accession

MI0010309

Description

Nematostella vectensis nve-mir-2042 precursor miRNA

Sequence

626 reads, 1192 reads per million, 19 experiments

uuuacaaugacgacacacccUUAUAAAUCAUCCUUGCACUACuuauguCGUACAUUGAUGAUUUAUGAAGguguguugcugacucugc
..........(((((((((.((((((((((((..((.((.((....)).)).))..)))))))))))).)))))))))..........

Structure

uuuacaauga         c            CU  C  U  u 
          cgacacacc UUAUAAAUCAUC  UG AC AC u
          ||||||||| ||||||||||||  || || ||  
          guugugugG AGUAUUUAGUAG  AC UG ug a
cgucucaguc         A            UU  A  C  u 

Annotation confidence High

Genome context

scaffold_231: 5526-5613 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nve-mir-2042

Mature nve-miR-2042-5p

• Accession: MIMAT0009806
• Description: Nematostella vectensis nve-miR-2042-5p mature miRNA
• Sequence: 21 - UUAUAAAUCAUCCUUGCACUAC - 42
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2042-3p

• Accession: MIMAT0009807
• Description: Nematostella vectensis nve-miR-2042-3p mature miRNA
• Sequence: 49 - CGUACAUUGAUGAUUUAUGAAG - 70
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663