miRBase entry: nve-mir-2043-1

Stem-loop nve-mir-2043-1


Accession
MI0010311
Description
Nematostella vectensis nve-mir-2043-1 precursor miRNA
Gene family
MIPF0000740; mir-2043


Sequence

918 reads, 2101 reads per million, 20 experiments
guaucugauaucgaaucucuUAUAUCGCCUUUUGAGGUUAUUuucuuaaUACCCUCAAAAGACGGUAUUAGagauuacacagcuggaca
((..(((......(((((((.((((((.(((((((((.((((.....)))).))))))))).)))))).)))))))...)))....)).

Structure
-  --au   auaucg       U      C         U    u 
 gu    cug      aaucucu AUAUCG CUUUUGAGG UAUU u
 ||    |||      ||||||| |||||| ||||||||| |||| c
 ca    gac      uuagaGA UAUGGC GAAAACUCC AUaa u
a  gguc   ---aca       U      A         C    u 


Annotation confidence High
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Genome context
scaffold_14: 1324936-1325024 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from nve-mir-2043-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nve-miR-2043-5p

Accession MIMAT0009810
Description Nematostella vectensis nve-miR-2043-5p mature miRNA
Sequence 21 - UAUAUCGCCUUUUGAGGUUAUU - 42
Evidence experimental
454 [1], Illumina [2]

Mature nve-miR-2043-3p

Accession MIMAT0009811
Description Nematostella vectensis nve-miR-2043-3p mature miRNA
Sequence 50 - UACCCUCAAAAGACGGUAUUAG - 71
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197

  2. PubMed ID: 24642861
    Cnidarian microRNAs frequently regulate targets by cleavage
    "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
    "Genome Res (2014) 24:651-663