miRBase entry: nve-mir-2047

Stem-loop nve-mir-2047


Accession
MI0010315
Description
Nematostella vectensis nve-mir-2047 precursor miRNA


Sequence

274 reads, 757 reads per million, 19 experiments
auccgggaguaaauucguaacugcucaaUUCGCCGAGCAGAUGUCGGAGAguucaacugUCAGACAUCUGCUCGGCGAAUUgagcaguuauuuugaccaaga
.((..((..((((...(((((((((((((((((((((((((((((.((.(((...))).)).))))))))))))))))))))))))))))))))).))..))

Structure
a  cg  ag    uuc                             G  G   u 
 uc  gg  uaaa   guaacugcucaaUUCGCCGAGCAGAUGUC GA Agu  
 ||  ||  ||||   ||||||||||||||||||||||||||||| || ||| c
 ag  cc  guuu   uauugacgagUUAAGCGGCUCGUCUACAG CU uca  
-  aa  -a    ---                             A  g   a 


Annotation confidence High
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Genome context
scaffold_3670: 1176-1277 [+]

Database links

Mature nve-miR-2047-5p

Accession MIMAT0009818
Description Nematostella vectensis nve-miR-2047-5p mature miRNA
Sequence 29 - UUCGCCGAGCAGAUGUCGGAGA - 50
Evidence experimental
454 [1], Illumina [2]

Mature nve-miR-2047-3p

Accession MIMAT0009819
Description Nematostella vectensis nve-miR-2047-3p mature miRNA
Sequence 60 - UCAGACAUCUGCUCGGCGAAUU - 81
Evidence experimental
454 [1]

References

  1. PubMed ID: 18830242
    Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
    "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
    "Nature (2008) 455:1193-1197

  2. PubMed ID: 24642861
    Cnidarian microRNAs frequently regulate targets by cleavage
    "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
    "Genome Res (2014) 24:651-663