miRBase entry: cfa-mir-20b

Stem-loop cfa-mir-20b


Accession
MI0010322
Description
Canis familiaris cfa-mir-20b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

guacCAAAGUGCUCACAGUGCAGGUAgucugggcuuuucucuacuguagugugggcacuuccgguaac
.((((.(((((((((((.(((((.(((.............)))))))).)))))))))))..))))..

Structure
-g    -A           G     G   ucugg 
  uacC  AAGUGCUCACA UGCAG UAg     g
  ||||  ||||||||||| ||||| |||     c
  augg  uucacgggugu auguc auc     u
ca    cc           g     -   ucuuu 


Annotation confidence Not enough data
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Genome context
chrX: 104896091-104896158 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cfa-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-miR-20b

Accession MIMAT0009830
Description Canis familiaris cfa-miR-20b mature miRNA
Sequence 5 - CAAAGUGCUCACAGUGCAGGUA - 26
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39