miRBase entry: cfa-let-7b

Stem-loop cfa-let-7b


Accession
MI0010329
Description
Canis familiaris cfa-let-7b precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

cggggUGAGGUAGUAGGUUGUGUGGUUucagggcagugauguugcccccucggaagauaacuauacaaccuacugccuuccccga
(((((.(((((((((((((((((((((((.((((((.....))))))(....)..)).)))))))))))))))))))))))))).

Structure
-     U                     -  -------a      u 
 cgggg GAGGUAGUAGGUUGUGUGGUU uc        gggcag g
 ||||| ||||||||||||||||||||| ||        |||||| a
 gcccc uuccgucauccaacauaucaa ag        cccguu u
a     -                     u  aaggcucc      g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 20033388-20033472 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cfa-let-7b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cfa-let-7b

Accession MIMAT0009836
Description Canis familiaris cfa-let-7b mature miRNA
Sequence 6 - UGAGGUAGUAGGUUGUGUGGUU - 27
Evidence not_experimental

References

  1. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39