Stem-loop sequence cfa-mir-105b

Accession

MI0010378 (change log)

Description

Canis familiaris miR-105b stem-loop

Gene family

MIPF0000074; mir-105

Stem-loop

   ugu         u  a          ucc  g    c   u 
5'    gcaucaugg ca augcucagac   uu gugg ugc u
      ||||||||| || ||||||||||   || |||| |||  
3'    ugugguauc gu uacgaguuug   aa uacc acg a
   auc         -  g          --u  g    -   u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (CanFam3.1; GCA_000002285.2): chrX: 120405349-120405428 [-]
• Overlapping transcripts:

  sense

  ENSCAFT00000030424 ; GABRA3-201; intron 1

Clustered miRNAs

< 10kb from cfa-mir-105b

• cfa-mir-105b: chrX: 120405349-120405428 [-]
• cfa-mir-105a: chrX: 120403195-120403275 [-]

Database links

• miRBase Tracker:MI0010378

Mature sequence cfa-miR-105b

• Accession: MIMAT0010198
• Sequence: 13 - ucaaaugcucagacuccuug - 32
• Evidence: by similarity; MI0002411
• Predicted targets:
  • TargetScanVert:cfa-miR-105b
  • miRDB:cfa-miR-105b

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).