miRBase entry: cfa-mir-496

Stem-loop cfa-mir-496

Accession

MI0010405

Description

Canis familiaris cfa-mir-496 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

agucagguacuugaauggagguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuucaguacuaaauucuucuuggg
.....((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))..............

Structure

---------aguca      u   u        u     gu         uua 
              gguacu gaa ggagguug ccaug  guguucauu   u
              |||||| ||| |||||||| |||||  |||||||||    
              ucauga cuu cCUCUAAC GGUAC  UAUGAGUag   u
ggguucuucuuaaa      -   u        C     AU         uau

Annotation confidence Not enough data

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Genome context

chr8: 69289410-69289507 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from cfa-mir-496

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-496

Accession	MIMAT0009906
Description	Canis familiaris cfa-miR-496 mature miRNA
Sequence	52 - UGAGUAUUACAUGGCCAAUCUC - 73
Evidence	not_experimental

References

PubMed ID: 18215311
miRNAminer: a tool for homologous microRNA gene search
"Artzi S, Kiezun A, Shomron N"
"BMC Bioinformatics (2008) 9:39