Stem-loop bta-mir-376b

Accession

MI0010444

Description

Bos taurus bta-mir-376b precursor miRNA

Literature search

11 open access papers mention bta-mir-376b
(68 sentences)

Sequence

48145 reads, 17.0 reads per million, 297 experiments

uucuuugguauuuaaaaGGUGGAUAUUCCUUCUAUGUUUacgugauucauagauaAUCAUAGAGGAAAAUCCAUGUUuucaguaucaaaugcu
...(((((((((.((((.((((((.(((((.(((((.(((.(((...)))...))).)))))))))).)))))).)))).)))))))))....

Structure

-uuc         u    G      A     U     U   --c   a 
    uuugguauu aaaa GUGGAU UUCCU CUAUG UUa   gug  
    ||||||||| |||| |||||| ||||| ||||| |||   ||| u
    aaacuauga uuUU UACCUA AAGGA GAUAC Aau   uac  
ucgu         c    G      A     -     U   aga   u 

Annotation confidence High

Genome context

21: 65929698-65929790 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from bta-mir-376b

Mature bta-miR-376b-5p

• Accession: MIMAT0061033
• Description: Bos taurus bta-miR-376b-5p mature miRNA
• Sequence: 18 - GGUGGAUAUUCCUUCUAUGUUU - 39
• Evidence: experimental ; cloned [2]

Mature bta-miR-376b-3p

• Accession: MIMAT0009945
• Description: Bos taurus bta-miR-376b-3p mature miRNA
• Sequence: 56 - AUCAUAGAGGAAAAUCCAUGUU - 77
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39


2. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90