miRBase entry: bta-mir-1179

Stem-loop bta-mir-1179


Accession
MI0010459
Description
Bos taurus bta-mir-1179 precursor miRNA
Gene family
MIPF0000632; mir-1179

Literature search
1 open access papers mention bta-mir-1179
(1 sentences)

Sequence

4 reads, 1 reads per million, 2 experiments
ggccagaagggaagAAGCAUUCUUUCAUUGGUUGGuguauguugccuugucaaccaaucagaggaugccauuuauccuuuucugacuagc
((.(((((((((.((((((((((((.(((((((((..............))))))))).)))))))))..))).))).)))))).))...

Structure
---  c      -   a   --         C         uguaug 
   gg cagaag gga gAA  GCAUUCUUU AUUGGUUGG      u
   || |||||| ||| |||  ||||||||| |||||||||       
   uc gucuuu ccu uuu  cguaggaga uaaccaacu      u
cga  a      u   a   ac         c         guuccg 


Annotation confidence Not enough data
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Genome context
chr21: 20044885-20044974 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-1179
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-1179

Accession MIMAT0009957
Description Bos taurus bta-miR-1179 mature miRNA
Sequence 15 - AAGCAUUCUUUCAUUGGUUGG - 35
Evidence not_experimental

References

  1. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125