miRBase entry: bta-mir-1197

Stem-loop bta-mir-1197


Accession
MI0010470
Description
Bos taurus bta-mir-1197 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

159 reads, 6 reads per million, 50 experiments
cuuccugguauuugaagacgcgguugaccaugguguguacgcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucgauaucacaucuucgcc
.....(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..)))))))..........

Structure
-----cuucc       -u     cgc   u       g   -g    - uuu 
          ugguauu  gaaga   ggu gaccaug ugu  uacg c   a
          |||||||  |||||   ||| ||||||| |||  |||| |   u
          acuauag  cuUCU   UCA CUGGUAC ACA  AUgc g   u
ccgcuucuac       cu     ---   U       -   GG    a uau 


Annotation confidence Not enough data
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Genome context
chr21: 67843672-67843768 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from bta-mir-1197
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-1197

Accession MIMAT0009966
Description Bos taurus bta-miR-1197 mature miRNA
Sequence 56 - UAGGACACAUGGUCUACUUCU - 76
Evidence not_experimental

References

  1. PubMed ID: 18945293
    Annotation of 390 bovine miRNA genes by sequence similarity with other species
    "Strozzi F, Mazza R, Malinverni R, Williams JL"
    "Anim Genet (2009) 40:125