Stem-loop bta-mir-7-1

Accession

MI0010471

Description

Bos taurus bta-mir-7-1 precursor miRNA

Literature search

22 open access papers mention bta-mir-7-1
(45 sentences)

Sequence

7977384 reads, 1415.0 reads per million, 315 experiments

guggagcagccagccccaucUGGAAGACUAGUGAUUUUGUUGUUgucuccugcgcucaaCAACAAGUCCCAGUCUGCCGCAUggugcuggccaccgca
((((....((((((.((((.(((.(((((.(.(((((.(((((((...........))))))))))))).))))).))).)))).))))))..)))).

Structure

-    agca      c    c   A     A U     U       ucuc 
 gugg    gccagc ccau UGG AGACU G GAUUU GUUGUUg    c
 ||||    |||||| |||| ||| ||||| | ||||| |||||||    u
 cgcc    cggucg ggUA GCC UCUGA C CUGAA CAACaac    g
a    --ac      u    C   G     C -     -       ucgc 

Annotation confidence High

Genome context

21: 19582936-19583033 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bta-mir-7-1

Mature bta-miR-7-5p

• Accession: MIMAT0003843
• Description: Bos taurus bta-miR-7-5p mature miRNA
• Sequence: 21 - UGGAAGACUAGUGAUUUUGUUGUU - 44
• Evidence: experimental ; cloned [2]

Mature bta-miR-7-1-3p

• Accession: MIMAT0050903
• Description: Bos taurus bta-miR-7-1-3p mature miRNA
• Sequence: 60 - CAACAAGUCCCAGUCUGCCGCAU - 82
• Evidence: experimental ; cloned [2]

References

1. PubMed ID: 19758457
   Characterization of bovine miRNAs by sequencing and bioinformatics analysis
   Jin W, Grant JR, Stothard P, Moore SS, Guan LL
   BMC Mol Biol (2009) 10:90


2. PubMed ID: 18945293
   Annotation of 390 bovine miRNA genes by sequence similarity with other species
   "Strozzi F, Mazza R, Malinverni R, Williams JL"
   "Anim Genet (2009) 40:125