miRBase entry: osa-MIR2055

Stem-loop osa-MIR2055


Accession
MI0010489
Description
Oryza sativa osa-MIR2055 precursor miRNA

Literature search
3 open access papers mention osa-MIR2055
(25 sentences)

Sequence

94 reads, 71 reads per million, 2 experiments
agaagauggaggcaccagcccaaggaaacacagacauugacacgcaauucaaggagaagauugcguccuacuuUUUCCUUGGGAAGGUGGUUUCucuucu
((((((.((((.((((..((((((((((...((........((((((((.........))))))))....)).))))))))))..)))).))))))))))

Structure
      u    g    ag          cac  acauugac        caa 
agaaga ggag cacc  cccaaggaaa   ag        acgcaauu   g
|||||| |||| ||||  ||||||||||   ||        ||||||||   g
ucuucu CUUU GUGG  GGGUUCCUUU   uc        ugcguuag   a
      -    G    AA          --u  ----aucc        aag 


Annotation confidence Not enough data
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Genome context
Chr9: 431432-431531 [-]

Database links

Mature osa-miR2055

Accession MIMAT0009980
Description Oryza sativa osa-miR2055 mature miRNA
Sequence 74 - UUUCCUUGGGAAGGUGGUUUC - 94
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 19055717
    Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
    Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
    BMC Plant Biol (2008) 8:123