Stem-loop sequence bfl-mir-2071

Accession MI0010509
Description Branchiostoma floridae miR-2071 stem-loop
Stem-loop 
uccgcag  ug -aua            g      ccgucc    g 
       gu  a    ugcggugcggug uagcaa      cgac u
       ||  |    |||||||||||| ||||||      |||| a
       ca  u    acgccgcgccac auuguu      gcug a
-------  gu gaaa            -      -----a    a
Get sequence
Deep sequencing
93 reads, 1 experiments
Genome context
Coordinates (JGI2.0) Overlapping transcripts
Bf_V2_39: 891953-892033 [-]
intergenic

Mature sequence bfl-miR-2071-5p

Accession MIMAT0019172
Previous IDs bfl-miR-2071*
Sequence

15 -  

augcggugcggugguagcaaccgu

 - 38

Get sequence
Deep sequencing 7 reads, 1 experiments
Evidence experimental; 454 [2]

Mature sequence bfl-miR-2071-3p

Accession MIMAT0009999
Previous IDs bfl-miR-2071
Sequence

54 -  

auuguuacaccgcgccgcaaaag

 - 76

Get sequence
Deep sequencing 86 reads, 1 experiments
Evidence experimental; cloned [1], 454 [2]

References

1
PMID:19196332 "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution" Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L Evol Dev. 11:41-49(2009).
2
PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).