Stem-loop bfl-mir-9-1

Accession

MI0010520

Description

Branchiostoma floridae bfl-mir-9-1 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

guguugUCUUUGGUUAUCUAGCUGUAUGagagucuuuugucaccAUAAAGCUAGGUAACCAAAACAacaaccauucccccua
.((((((.(((((((((((((((.((((.(.(.(....).).))))).))))))))))))))))))))).............

Structure

------------g      C               G    a a u u 
             uguugU UUUGGUUAUCUAGCU UAUG g g c u
             |||||| ||||||||||||||| |||| | | |  
             acaACA AAACCAAUGGAUCGA AUAc c c g u
aucccccuuacca      -               A    - a u u 

Annotation confidence Not enough data

Comments

The miR-9-3p sequence was previously named mir-79 here and in [1]. The two are clearly processed from the same hairpin, so entries are merged here.

Genome context

GG666611.1: 400332-400413 [+]

Mature bfl-miR-9-5p

• Accession: MIMAT0009465
• Description: Branchiostoma floridae bfl-miR-9-5p mature miRNA
• Sequence: 7 - UCUUUGGUUAUCUAGCUGUAUG - 28
• Evidence: experimental ; 454 [1], cloned [2]

Mature bfl-miR-79

• Accession: MIMAT0009477
• Description: Branchiostoma floridae bfl-miR-79 mature miRNA
• Sequence: 45 - AUAAAGCUAGGUAACCAAAACA - 66

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 19196332
   Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution
   "Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L"
   "Evol Dev (2009) 11:41-49