miRBase entry: ppt-MIR2085

Stem-loop ppt-MIR2085


Accession
MI0010534
Description
Physcomitrella patens ppt-MIR2085 precursor miRNA
Gene family
MIPF0000809; MIR2084


Sequence

aaaaucugaaagucguugaagcgccugcuucgauggauugugggcuacuccuccguuguaguccACAAUCCAACAAUGCAGGCGCuuccacgaauuucaagauacuuguaacug
...((((((((.((((.(((((((((((...(.(((((((((((((((.........))))))))))))))).)...))))))))))).)))).)))).))))...........

Structure
--------aaa    -    g    u           uuc a               ucc 
           aucu gaaa ucgu gaagcgccugc   g uggauugugggcuac   u
           |||| |||| |||| |||||||||||   | |||||||||||||||   c
           uaga cuuu agca cuuCGCGGACG   C ACCUAACAccugaug   c
gucaauguuca    a    a    c           UAA A               uug 


Annotation confidence Not enough data
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Genome context
Chr18: 9486736-9486849 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR2085
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppt-miR2085

Accession MIMAT0010019
Description Physcomitrella patens ppt-miR2085 mature miRNA
Sequence 65 - ACAAUCCAACAAUGCAGGCGC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19096705
    Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
    Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
    PLoS Genet (2008) 4:e1000314