Stem-loop ppt-MIR2081

Accession

MI0010535

Description

Physcomitrella patens ppt-MIR2081 precursor miRNA

Sequence

guuugcccaguacuccagugaucagacacauaacucuagcuauugggcagacaguguuagaguagacagugucugcccaauAGCUAGAGUUAUGUGUCUGAUuuaagagcaggugucuuuaa
....(((.....(((....((((((((((((((((((((((((((((((((((.((((......)))).))))))))))))))))))))))))))))))))))...)))..)))........

Structure

----guuu   cagua   cagu                                  g    ag 
        gcc     cuc    gaucagacacauaacucuagcuauugggcagaca uguu  a
        |||     |||    |||||||||||||||||||||||||||||||||| ||||   
        ugg     gag    uUAGUCUGUGUAUUGAGAUCGAuaacccgucugu acag  g
aauuucug   ---ac   -aau                                  g    au 

Annotation confidence Not enough data

Genome context

Chr18: 9091502-9091623 [-]

Mature ppt-miR2081

• Accession: MIMAT0010020
• Description: Physcomitrella patens ppt-miR2081 mature miRNA
• Sequence: 82 - AGCUAGAGUUAUGUGUCUGAU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314