Stem-loop ppt-MIR2083

Accession

MI0010537

Description

Physcomitrella patens ppt-MIR2083 precursor miRNA

Gene family

MIPF0000996; MIR899

Sequence

aaaaguguguguaugcggaaguuggagaaaacccagacuucauugcucgaugaagcauguagcuucgcagucguacUUCUUGCACUCCUCCAUCUCUcgcaucucuugcgcauugugguucuccaacaccugcacagcggcggucuuguccggauuagggaucgucuacaccagauaagccacggcguuuuucucggagaaaaauaccauccuuugguucaacaacgguugcugcguuuuccacguucggauacaacccugcccaguugcugugagAGAUUGACGAGUGCAAGAAGAcccucuuuccauguuccagacgca
.......(((((....((((..((((((.............(((((.....(((((.....)))))))))).((.((((((((((((.((.((((((((((.(..(((.(((..(.((((.((((((.........(((((((.((((((.((..((((.....))))..)).))))))))..((.((((((((...)))))))).))..((.(((......))).))..))))).........))).)))...)))))))).)))..).)))))))))).)).))))))))))))))....))))))..))))..)))))

Structure

aaaagug     augc    gu      aaacccagacuucauugcucgaugaagcauguagcuucgcaguc  a            C  C          u uc   c   uu u    --c   -   accugcaca     -------------------------------------------------  u      c  au    g 
       ugugu    ggaa  uggaga                                            gu cUUCUUGCACUC UC AUCUCUcgca c  uug gca  g gguu   ucc aac         gcggc                                                 gg cuuguc gg  uagg a
       |||||    ||||  ||||||                                            || |||||||||||| || |||||||||| |  ||| |||  | ||||   ||| |||         |||||                                                 || |||||| ||  |||| u
       acgca    ccuu  accuuu                                            cA GAAGAACGUGAG AG UAGAgagugu g  gac cgu  c ccaa   agg uug         cgucg                                                 cc gaauag cc  aucu c
-------     --ga    gu      ----------------------------------------cucc  -            C  U          c uu   c   -- -    cau   c   caccuuuug     uuggcaacaacuugguuuccuaccauaaaaagaggcucuuuuugcggca  -      a  ac    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ppt-miR2083-5p

• Accession: MIMAT0010022
• Description: Physcomitrella patens ppt-miR2083-5p mature miRNA
• Sequence: 77 - UUCUUGCACUCCUCCAUCUCU - 97
• Evidence: experimental ; Illumina [1]

Mature ppt-miR2083-3p

• Accession: MIMAT0010023
• Description: Physcomitrella patens ppt-miR2083-3p mature miRNA
• Sequence: 277 - AGAUUGACGAGUGCAAGAAGA - 297
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19096705
   Physcomitrella patens DCL3 is required for 22-24 nt siRNA accumulation, suppression of retrotransposon-derived transcripts, and normal development
   Cho SH, Addo-Quaye C, Coruh C, Arif MA, Ma Z, Frank W, Axtell MJ
   PLoS Genet (2008) 4:e1000314