Stem-loop mtr-MIR2086

Accession

MI0010539

Description

Medicago truncatula mtr-MIR2086 precursor miRNA

Gene family

MIPF0001302; MIR2086

Literature search

1 open access papers mention mtr-MIR2086
(1 sentences)

Sequence

uucaccaacuuuCCAGUUCUGCGUUCAUGUCCCcugcagcuugacuuuaggggaaaucgagcaacaaggGACAUGAAUGCAGAACUGGAAagauggucugag
...((((.(((((((((((((((((((((((((.((..((((((.(((....))).))))))..)).))))))))))))))))))))))))).)))).....

Structure

--uuc    a                         c  ca      c   a 
     acca cuuuCCAGUUCUGCGUUCAUGUCCC ug  gcuuga uuu g
     |||| ||||||||||||||||||||||||| ||  |||||| |||  
     uggu gaAAGGUCAAGACGUAAGUACAGgg ac  cgagcu aag g
gaguc    a                         a  aa      a   g 

Annotation confidence Not enough data

Genome context

chr2: 31686255-31686356 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR2086

Mature mtr-miR2086-5p

• Accession: MIMAT0010026
• Description: Medicago truncatula mtr-miR2086-5p mature miRNA
• Sequence: 13 - CCAGUUCUGCGUUCAUGUCCC - 33
• Evidence: experimental ; Illumina [1], Northern [1]

Mature mtr-miR2086-3p

• Accession: MIMAT0010027
• Description: Medicago truncatula mtr-miR2086-3p mature miRNA
• Sequence: 70 - GACAUGAAUGCAGAACUGGAA - 90
• Evidence: experimental ; Illumina [1], Northern [1], 454 [2]

References

1. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593


2. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796