Stem-loop mtr-MIR2087

Accession

MI0010544

Description

Medicago truncatula mtr-MIR2087 precursor miRNA

Gene family

MIPF0000824; MIR2629

Sequence

gcuugaugaaaacugcucuugacacauaugauagagcuaaaaaacauauguaaaagacgaaaaugcccauguagcaguuuacuaccGAAGUAAAGAACCGGCUGCAGuuaacugcugaagugugaaguuuuuuuuuuuuuuucuuuuucgucggcaguuaaCUGCAGUCGGUUUCUUACUUCgguaguuaaccguugcaggggcauuuucgucauuuacauguguuuuucagcccuaucauaugugucaacagcaauuuucuagc
.......(((((.((((.((((((((((((((((.(((.(((((((((((((((.(((((((((((((.((((((.(((.(((((((((((((.((((((((((((((((((((((((.....((((...............))))....)))))))))))))))))))))))).))))))))))))).))).)))))).))))))))))))).))))))))))))))).))).)))))))))))))))).)))).)))))....

Structure

gcuugau     c    c                a   a               a             a      a   u             A                        agugu    uuuuuu 
       gaaaa ugcu uugacacauaugauag gcu aaaaacauauguaaa gacgaaaaugccc uguagc guu acuaccGAAGUAA GAACCGGCUGCAGuuaacugcuga     gaag      u
       ||||| |||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||| |||||| ||| ||||||||||||| ||||||||||||||||||||||||     ||||      u
       cuuuu acga aacuguguauacuauc cga uuuuuguguacauuu cugcuuuuacggg acguug caa ugauggCUUCAUU UUUGGCUGACGUCaauugacggcu     uuuc      u
---cgau     a    c                c   c               a             g      c   u             C                        -gcuu    uuuuuu 

Annotation confidence Not enough data

Genome context

chr2: 13519918-13520182 [-]

Mature mtr-miR2087-5p

• Accession: MIMAT0010036
• Description: Medicago truncatula mtr-miR2087-5p mature miRNA
• Sequence: 87 - GAAGUAAAGAACCGGCUGCAG - 107
• Evidence: experimental ; Illumina [1-2], Northern [1]

Mature mtr-miR2087-3p

• Accession: MIMAT0010037
• Description: Medicago truncatula mtr-miR2087-3p mature miRNA
• Sequence: 162 - CUGCAGUCGGUUUCUUACUUC - 182
• Evidence: experimental ; Illumina [1-2], Northern [1]

References

1. PubMed ID: 19068109
   High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
   Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
   BMC Genomics (2008) 9:593


2. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105