miRBase entry: mtr-MIR2088

Stem-loop mtr-MIR2088


Accession
MI0010545
Description
Medicago truncatula mtr-MIR2088 precursor miRNA


Sequence

ucucuguaucucgaaguagacggcggcuuaaccgauguAGGCCUAGAUUACAUUGGACaaaacaguccaaacuugagaugguuacuucuuggUCCAAUGUAAUCUAGGUCUAcaucuguuaagucucuaaaguauucugaaagaga
(((((...((..(((......((.((((((((.(((((((((((((((((((((((((.....(((...((((......))))))).....))))))))))))))))))))))))).)))))))).))......))).)).)))))

Structure
     gua  uc   guagac  c        c                         aaaac   cca    ug 
ucucu   uc  gaa      gg ggcuuaac gauguAGGCCUAGAUUACAUUGGAC     agu   aacu  a
|||||   ||  |||      || |||||||| |||||||||||||||||||||||||     |||   ||||   
agaga   ag  cuu      uc cugaauug cuacAUCUGGAUCUAAUGUAACCUg     uca   uugg  g
     --a  -u   augaaa  u        u                         guucu   ---    ua 


Annotation confidence Not enough data
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Genome context
chr8: 15599389-15599534 [-]

Database links

Mature mtr-miR2088-5p

Accession MIMAT0010038
Description Medicago truncatula mtr-miR2088-5p mature miRNA
Sequence 39 - AGGCCUAGAUUACAUUGGAC - 58
Evidence experimental
Illumina [1,3], Northern [1], 454 [2]

Mature mtr-miR2088-3p

Accession MIMAT0010039
Description Medicago truncatula mtr-miR2088-3p mature miRNA
Sequence 93 - UCCAAUGUAAUCUAGGUCUA - 112
Evidence experimental
Illumina [1,3], Northern [1], 454 [2]

References

  1. PubMed ID: 19068109
    High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families
    Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T
    BMC Genomics (2008) 9:593

  2. PubMed ID: 19767456
    Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
    "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
    "Plant Cell (2009) 21:2780-2796

  3. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105