Stem-loop sequence osa-MIR1846e

Accession

MI0010547 (change log)

Description

Oryza sativa miR1846e stem-loop

Gene family

MIPF0000577; MIR1846

Literature search

10 open access papers mention osa-MIR1846e
(14 sentences)

Stem-loop

   -  c   c   aa             ac     g 
5'  cg auc gcc  cgaggaggccggg  caccg a
    || ||| |||  |||||||||||||  |||||  
3'  gc uag cgg  gcuccuccggccu  guggc u
   g  c   a   cc             ca     c 

Deep sequencing

113 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr9: 13211437-13211505 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010547

Mature sequence osa-miR1846e

• Accession: MIMAT0010042
• Sequence: 10 - caacgaggaggccgggacca - 29
• Deep sequencing: 109 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000510FB1_39947

References

1. PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds" Xue LJ, Zhang JJ, Xue HW Nucleic Acids Res. 37:916-930(2009).