Stem-loop sequence osa-MIR2096

Accession

MI0010556 (change log)

Description

Oryza sativa miR2096 stem-loop

Literature search

2 open access papers mention osa-MIR2096
(3 sentences)

Stem-loop

   --      gca              c                    g  gccg           a      gcgagaauucacugaaauuaccgcgccaucuuaucuccgcaaguugaagaa 
5'   gacgcc   cugccgauuucccc ucgggcgagccaucggagcg gg    uuggcucccaa gcagac                                                   u
     ||||||   |||||||||||||| |||||||||||||||||||| ||    ||||||||||| ||||||                                                    
3'   uugcgg   ggcggcuaaagggg aguccgcucgguagcuuugc cc    aaccgaggguu cgucug                                                   a
   gu      -ag              -                    g  ----           -      uauacaucaucaucuguguacuuaagugauuuuuaaugacgcgggcuuaau 

Deep sequencing

7 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr1: 6443388-6443624 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010556

Mature sequence osa-miR2096-5p

• Accession: MIMAT0010056
• Sequence: 11 - ugccgauuucccccucgggcg - 31
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000042AE7D_39947

Mature sequence osa-miR2096-3p

• Accession: MIMAT0010057
• Sequence: 209 - ccugaggggaaaucggcggga - 229
• Deep sequencing: 5 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000563EC_39947

References

1. PMID:19103661 "Characterization and expression profiles of miRNAs in rice seeds" Xue LJ, Zhang JJ, Xue HW Nucleic Acids Res. 37:916-930(2009).