miRBase entry: gma-MIR167d

Stem-loop gma-MIR167d


Accession
MI0010571
Description
Glycine max gma-MIR167d precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
26 open access papers mention gma-MIR167d
(198 sentences)

Sequence

aagggucacaagggaaaaagUGAAGCUGCCAGCAUGAUCUAgcuuugguuagugggagccagagagugcuaacccucacuaggucaugcugugcuagccucacuccuuccuauuuggagac
....(((.((((((((..(((((.((((((((((((((((((....((((((((............))))))))....))))))))))))).)).))).)))))..)))))..)))..)))

Structure
aagg   -a   --     aa     A   -  -             cuuu        ggagc 
    guc  caa  gggaa  agUGA GCU GC CAGCAUGAUCUAg    gguuagug     c
    |||  |||  |||||  ||||| ||| || |||||||||||||    ||||||||      
    cag  guu  uccuu  ucacu cga cg gucguacuggauc    ccaaucgu     a
----   ag   ua     cc     c   u  u             acuc        gagag 


Annotation confidence Not enough data
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Genome context
chr10: 2648276-2648396 [+]

Database links

Mature gma-miR167d

Accession MIMAT0010078
Description Glycine max gma-miR167d mature miRNA
Sequence 21 - UGAAGCUGCCAGCAUGAUCUA - 41
Evidence experimental
cloned [1], 454 [2], SOLiD [3]

References

  1. PubMed ID: 19084500
    Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
    "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
    "Biochem Biophys Res Commun (2009) 378:799-803

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506

  3. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972