miRBase entry: gma-MIR1510b

Stem-loop gma-MIR1510b


Accession
MI0010575
Description
Glycine max gma-MIR1510b precursor miRNA
Gene family
MIPF0000703; MIR1510

Literature search
16 open access papers mention gma-MIR1510b
(36 sentences)

Sequence

uuuauggaaguggAGGGAUAGGUAAAACAACUACUucuguaaaaguaauuguuauaguuaguUGUUGUUUUACCUAUUCCACCaauuccaucua
...((((((.(((.(((((((((((((((((.(((.((((((.........))))))..))).))))))))))))))))).))).))))))...

Structure
uuu      g   A                 U   -u      aag 
   auggaa ugg GGGAUAGGUAAAACAAC ACU  cuguaa   u
   |||||| ||| ||||||||||||||||| |||  ||||||   a
   uaccuu aCC CCUUAUCCAUUUUGUUG uga  gauauu   a
auc      a   A                 U   uu      guu 


Annotation confidence Not enough data
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Genome context
chr2: 6675723-6675816 [+]

Database links

Mature gma-miR1510b-3p

Accession MIMAT0010082
Description Glycine max gma-miR1510b-3p mature miRNA
Sequence 63 - UGUUGUUUUACCUAUUCCACC - 83
Evidence experimental
cloned [1], 454 [2], Illumina [3]

Mature gma-miR1510b-5p

Accession MIMAT0020939
Description Glycine max gma-miR1510b-5p mature miRNA
Sequence 14 - AGGGAUAGGUAAAACAACUACU - 35
Evidence experimental
Illumina [3-4]

References

  1. PubMed ID: 19084500
    Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
    "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
    "Biochem Biophys Res Commun (2009) 378:799-803

  2. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  3. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506

  4. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553