Stem-loop ebv-mir-BART21

Accession

MI0010627

Description

Epstein Barr virus ebv-mir-BART21 precursor miRNA

Gene family

MIPF0000961; mir-BART21

Sequence

gggcuggguauUCACUAGUGAAGGCAACUAACacaguuagacgugCUAGUUGUGCCCACUGGUGUUUauccggucc
((((((((((..((((((((...(((((((.(((........))).)))))))...))))))))..))))))))))

Structure

          uU        AAG       A   agu 
gggcugggua  CACUAGUG   GCAACUA Cac   u
||||||||||  ||||||||   ||||||| |||    
ccuggccuaU  GUGGUCAC   UGUUGAU gug   a
          UU        CCG       C   cag 

Annotation confidence Not enough data

Genome context

HHV507799: 145503-145578 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from ebv-mir-BART21

Mature ebv-miR-BART21-5p

• Accession: MIMAT0010130
• Description: Epstein Barr virus ebv-miR-BART21-5p mature miRNA
• Sequence: 12 - UCACUAGUGAAGGCAACUAAC - 32
• Evidence: experimental ; 454 [1], cloned [2], Northern [2]

Mature ebv-miR-BART21-3p

• Accession: MIMAT0010131
• Description: Epstein Barr virus ebv-miR-BART21-3p mature miRNA
• Sequence: 46 - CUAGUUGUGCCCACUGGUGUUU - 67
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19144710
   Identification of novel Epstein-Barr virus microRNA genes from nasopharyngeal carcinomas
   "Zhu JY, Pfuhl T, Motsch N, Barth S, Nicholls J, Grasser F, Meister G"
   "J Virol (2009) 83:3333-3341


2. PubMed ID: 19881953
   Modulation of LMP2A expression by a newly identified Epstein-Barr virus-encoded microRNA miR-BART22
   "Lung RW, Tong JH, Sung YM, Leung PS, Ng DC, Chau SL, Chan AW, Ng EK, Lo KW, To KF"
   "Neoplasia (2009) 11:1174-1184