Stem-loop sequence hsa-mir-2114

Accession

MI0010633 (change log)

Symbol

HGNC:MIR2114

Description

Homo sapiens miR-2114 stem-loop

Gene family

MIPF0001464; mir-2114

Literature search

1 open access papers mention hsa-mir-2114
(3 sentences)

Stem-loop

     u   u   ccu        c     a  -g    gaua 
5' cc cca gcu   agucccuu cuuga gc  gucg    a
   || ||| |||   |||||||| ||||| ||  ||||     
3' gg ggu cga   ucagggaa gaacu cg  cagu    u
     u   -   acu        c     c  ag    acac 

Deep sequencing

426 reads, 0 reads per million, 81 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 150228004-150228083 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR2114
• HGNC:MIR2114
• miRBase Tracker:MI0010633

Mature sequence hsa-miR-2114-5p

• Accession: MIMAT0011156
• Previous IDs: hsa-miR-2114
• Sequence: 13 - uagucccuuccuugaagcgguc - 34
• Deep sequencing: 333 reads, 71 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-2114-5p
  • TargetScanVert:hsa-miR-2114-5p
  • miRDB:hsa-miR-2114-5p
  • microrna.org:hsa-miR-2114-5p

Mature sequence hsa-miR-2114-3p

• Accession: MIMAT0011157
• Previous IDs: hsa-miR-2114*
• Sequence: 49 - cgagccucaagcaagggacuu - 69
• Deep sequencing: 89 reads, 35 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Predicted targets:
  • TargetMiner:hsa-miR-2114-3p
  • TargetScanVert:hsa-miR-2114-3p
  • miRDB:hsa-miR-2114-3p
  • microrna.org:hsa-miR-2114-3p

References

1. PMID:19390579 "Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries" Wyman SK, Parkin RK, Mitchell PS, Fritz BR, O'Briant K, Godwin AK, Urban N, Drescher CW, Knudsen BS, Tewari M PLoS One. 4:e5311(2009).
2. PMID:20224791 "Discovery of novel microRNAs in female reproductive tract using next generation sequencing" Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH PLoS One. 5:e9637(2010).