miRBase entry: bra-MIR157a

Stem-loop bra-MIR157a


Accession
MI0010648
Description
Brassica rapa bra-MIR157a precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
7 open access papers mention bra-MIR157a
(42 sentences)

Sequence

gugaugcugguugUUGACAGAAGAUAGAGAGCACuaaggaugacaugcaaguacauauguauguaucaucacaccgccuguggaugauuacaaaaauagccugcaugucuacucuuucgugcucucuauacuucugucaccaccauuau
((((((.((((....(((((((((((((((((((.(((((.((((((((.((...(((...(((((((((.(((.....)))))))).))))...))))).))))))))...))))).))))))))))).)))))))))))).))))))

Structure
      c    ugUU        -           u     --u        a  aca   gua    -     a   c 
gugaug uggu    GACAGAAG AUAGAGAGCAC aagga   gacaugca gu   uau   ugua ucauc cac g
|||||| ||||    |||||||| ||||||||||| |||||   |||||||| ||   |||   |||| ||||| ||| c
uauuac acca    cugucuuc uaucucucgug uuucu   cuguacgu cg   aua   acau aguag gug c
      c    ----        a           c     cau        c  ---   aaa    u     -   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bra-miR157a

Accession MIMAT0010152
Description Brassica rapa bra-miR157a mature miRNA
Sequence 14 - UUGACAGAAGAUAGAGAGCAC - 34
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 18558089
    Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    "He XF, Fang YY, Feng L, Guo HS"
    "FEBS Lett (2008) 582:2445-2452

  2. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146