Stem-loop bra-MIR159a

Accession

MI0010649

Description

Brassica rapa bra-MIR159a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

9 open access papers mention bra-MIR159a
(53 sentences)

Sequence

aaguagggcuccuuauaguucaaacgagaguuuagcaggguaaagaaaagcugcuaagcuaugaaucccauaagcccuaauccuuauauauaaaaaggauuugguuauauggcuuacauaucucaggagcuuuaacuugcccuuuaauugcuuuuacucuucUUUGGAUUGAAGGGAGCUCUAca
..((((((((((((.(((((((((.((((((..((((((((((...((((((.((.((.((((.(..(((((((((..(((((((.........))))))).)))).)))))..).)))).)).)).))))))...))))))......))))...)))))).))))))))).)))))))))))).

Structure

aa            a         c      -uu    ------      aga      g  a  c    a uc     -    cu       aua 
  guagggcuccuu uaguucaaa gagagu   agca      ggguaa   aaagcu cu ag uaug a  ccaua agcc  aauccuu   u
  |||||||||||| ||||||||| ||||||   ||||      ||||||   |||||| || || |||| |  ||||| ||||  |||||||   a
  cAUCUCGAGGGA GUUAGGUUU uucuca   ucgu      cccguu   uuucga ga uc auac u  gguau uugg  uuaggaa   u
-a            A         c      uuu    uaauuu      caa      g  c  u    a uc     a    -u       aaa 

Annotation confidence Not enough data

Genome context

chrA7: 15273666-15273850 [+]

Mature bra-miR159a

• Accession: MIMAT0010153
• Description: Brassica rapa bra-miR159a mature miRNA
• Sequence: 163 - UUUGGAUUGAAGGGAGCUCUA - 183
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452