miRBase entry: bra-MIR160a

Stem-loop bra-MIR160a


Accession
MI0010650
Description
Brassica rapa bra-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
8 open access papers mention bra-MIR160a
(32 sentences)

Sequence

uauguguaguuguauaagauguguaUGCCUGGCUCCCUGUAUGCCAuccucuaagcucaucgaccauugaugaccuccgugaaugGCGUAUGAGGAGCCAUGCAUAuuuucauauacauuuacauac
..(((((((.((((((.((...((((((.(((((((.((((((((((.(.(..((.(((((((...))))))).))..).).)))))))))).))))))).))))))..)).)))))).))))))).

Structure
ua       u      a  ugu      C       C          c u ua  c       c 
  uguguag uguaua ga   guaUGC UGGCUCC UGUAUGCCAu c c  ag ucaucga  
  ||||||| |||||| ||   |||||| ||||||| |||||||||| | |  || ||||||| c
  auacauu acauau cu   uAUACG ACCGAGG GUAUGCGgua g g  uc aguaguu  
-c       u      a  -uu      U       A          a u cc  c       a 


Annotation confidence Not enough data
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Genome context
chrA5: 3222211-3222337 [-]

Database links

Mature bra-miR160a-5p

Accession MIMAT0010154
Description Brassica rapa bra-miR160a-5p mature miRNA
Sequence 26 - UGCCUGGCUCCCUGUAUGCCA - 46
Evidence experimental
cloned [1], Northern [1]

Mature bra-miR160a-3p

Accession MIMAT0010155
Description Brassica rapa bra-miR160a-3p mature miRNA
Sequence 86 - GCGUAUGAGGAGCCAUGCAUA - 106
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 18558089
    Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    "He XF, Fang YY, Feng L, Guo HS"
    "FEBS Lett (2008) 582:2445-2452