Stem-loop bra-MIR164a

Accession

MI0010651

Description

Brassica rapa bra-MIR164a precursor miRNA

Gene family

MIPF0000045; MIR164

Literature search

12 open access papers mention bra-MIR164a
(29 sentences)

Sequence

ccuccacguUGGAGAAGCAGGGCACGUGCAaaccaacaaacacgagaucuaucucauguaauuugcacgugcuccacuccuccaacaugagc
.(((...(((((((.((..(((((((((((((.......(((.((((....)))).)))..)))))))))))))..)).)))))))..))).

Structure

c   cac       A  CA             ccaacaa   c    u 
 cuc   guUGGAG AG  GGGCACGUGCAaa       aca gaga c
 |||   ||||||| ||  |||||||||||||       ||| ||||  
 gag   caaccuc uc  cucgugcacguuu       ugu cucu u
c   -ua       c  ac             -----aa   a    a 

Annotation confidence Not enough data

Genome context

chrA5: 150875-150966 [-]

Mature bra-miR164a

• Accession: MIMAT0010156
• Description: Brassica rapa bra-miR164a mature miRNA
• Sequence: 10 - UGGAGAAGCAGGGCACGUGCA - 30
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452


2. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146