Stem-loop bra-MIR167a

Accession

MI0010652

Description

Brassica rapa bra-MIR167a precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

9 open access papers mention bra-MIR167a
(37 sentences)

Sequence

ggugcaccggcaucugaUGAAGCUGCCAGCAUGAUCUAguuaacuuuauuucuccguuguuuauccaugacaauggaaaagggauaagugucgauuagaucauguucguaguuucacccguugacugucgcauc
(((((..(((((.(.(.(((((((((.((((((((((((((.(((((((((((((((((((.......)))))))))...)))))))).)).)))))))))))))).))))))))).).).)).)))..)))))

Structure

     ac   -  u u a         C              a  -        ---         ua 
ggugc  cgg ca c g UGAAGCUGC AGCAUGAUCUAguu ac uuuauuuc   uccguuguu  u
|||||  ||| || | | ||||||||| |||||||||||||| || ||||||||   |||||||||  c
cuacg  guc gu g c acuuugaug uuguacuagauuag ug gaauaggg   agguaacag  c
     cu   a  u c c         c              c  u        aaa         ua 

Annotation confidence Not enough data

Genome context

chrA3: 19161779-19161912 [+]

Mature bra-miR167a

• Accession: MIMAT0010157
• Description: Brassica rapa bra-miR167a mature miRNA
• Sequence: 18 - UGAAGCUGCCAGCAUGAUCUA - 38
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452