Stem-loop bra-MIR171a

Accession

MI0010656

Description

Brassica rapa bra-MIR171a precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

7 open access papers mention bra-MIR171a
(10 sentences)

Sequence

cgagauauuggugugguucaaucagaaaaccacacucuuuuguuguagagaucgguuuguuugaUUGAGCCGUGCCAAUAUCACG
...((((((((((((((((((((((((((((...((((........))))...))))).)))))))))))))))))))))))...

Structure

cga                       -     aca    uuu 
   gauauuggugugguucaaucaga aaacc   cucu   g
   ||||||||||||||||||||||| |||||   ||||    
   CUAUAACCGUGCCGAGUUaguuu uuugg   gaga   u
GCA                       g     cua    ugu 

Annotation confidence Not enough data

Genome context

chrA1: 22648705-22648789 [-]

Mature bra-miR171a

• Accession: MIMAT0010161
• Description: Brassica rapa bra-miR171a mature miRNA
• Sequence: 65 - UUGAGCCGUGCCAAUAUCACG - 85
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 18558089
   Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
   "He XF, Fang YY, Feng L, Guo HS"
   "FEBS Lett (2008) 582:2445-2452