miRBase entry: bol-MIR172a

Stem-loop bol-MIR172a


Accession
MI0010665
Description
Brassica oleracea bol-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
9 open access papers mention bol-MIR172a
(79 sentences)

Sequence

cguuuuuuguaggcgcagcaccaucaagauucacauggaaauugaaaaaucuccuaauuuuuaauuaggguuuugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaaccgacg
((((..((((.((.((((((.(((((((((((.((((...((...(((((..(((((((...))))))))))))...))...)))).))))))))))).)))))).)).))))..))))

Structure
    uu    a  c      c           a    gaa  uga     cu       u 
cguu  uugu gg gcagca caucaagauuc caug   au   aaaau  ccuaauu  
||||  |||| || |||||| ||||||||||| ||||   ||   |||||  ||||||| u
gcag  aaca cU CGUCGU GUAGUUCUAAG guau   ua   uuuug  ggauuaa  
    cc    a  A      A           A    aug  uag     --       u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bol-miR172a

Accession MIMAT0010171
Description Brassica oleracea bol-miR172a mature miRNA
Sequence 87 - AGAAUCUUGAUGAUGCUGCAU - 107
Evidence not_experimental

References

  1. PubMed ID: 18558089
    Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    "He XF, Fang YY, Feng L, Guo HS"
    "FEBS Lett (2008) 582:2445-2452