miRBase entry: bol-MIR398a

Stem-loop bol-MIR398a


Accession
MI0010667
Description
Brassica oleracea bol-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
3 open access papers mention bol-MIR398a
(4 sentences)

Sequence

ucucaaaGGAGUGUCAUGAGAACACGGAuccucuuguuucuuuaagauuuccacugaaaccauugaguauUGUGUUCUCAGGUCACCCCUUugaa
..(((((((.(((.(.((((((((((.((.(((..(((((...............)))))....))).)))))))))))).).))).))))))).

Structure
uc       A   U A          G  c   --uu     uuuaag 
  ucaaaGG GUG C UGAGAACACG Au cuc    guuuc      a
  ||||||| ||| | |||||||||| || |||    |||||      u
  aguUUCC CAC G ACUCUUGUGU ua gag    caaag      u
-a       C   U G          -  u   uuac     ucaccu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bol-miR398a-5p

Accession MIMAT0010173
Description Brassica oleracea bol-miR398a-5p mature miRNA
Sequence 8 - GGAGUGUCAUGAGAACACGGA - 28
Evidence not_experimental

Mature bol-miR398a-3p

Accession MIMAT0010174
Description Brassica oleracea bol-miR398a-3p mature miRNA
Sequence 71 - UGUGUUCUCAGGUCACCCCUU - 91
Evidence not_experimental

References

  1. PubMed ID: 18558089
    Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica
    "He XF, Fang YY, Feng L, Guo HS"
    "FEBS Lett (2008) 582:2445-2452