Stem-loop sja-mir-71a

Accession

MI0010669

Description

Schistosoma japonicum sja-mir-71a precursor miRNA

Gene family

MIPF0000278; mir-71

Literature search

16 open access papers mention sja-mir-71a
(103 sentences)

Sequence

gugauacuagugcugUGAAAGACGAUGGUAGUGAGAugccaguugcaucucgcuuccccgccuuucccgguaagaaucac
(((((.((..(((((.(((((.((..((.((((((((((.....)))))))))).)).)).))))).))))))).)))))

Structure

     a  ag     U     A  AU  U          c 
gugau cu  ugcug GAAAG CG  GG AGUGAGAugc a
||||| ||  ||||| ||||| ||  || |||||||||| g
cacua ga  auggc cuuuc gc  cc ucgcucuacg u
     a  --     c     c  -c  u          u 

Annotation confidence Not enough data

Genome context

CABF01007682.1: 3056-3135 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from sja-mir-71a

Mature sja-miR-71a

• Accession: MIMAT0010176
• Description: Schistosoma japonicum sja-miR-71a mature miRNA
• Sequence: 16 - UGAAAGACGAUGGUAGUGAGA - 36
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596