Stem-loop sequence sja-bantam

Accession

MI0010670 (change log)

Description

Schistosoma japonicum bantam stem-loop

Gene family

MIPF0000153; bantam

Literature search

15 open access papers mention sja-bantam
(144 sentences)

Stem-loop

     gu       u      c   g   --------    c   u 
5' aa  cggcuuu auugcg ucu aga        aaaa caa u
   ||  ||||||| |||||| ||| |||        |||| |||  
3' uu  gucgaaa uagcgc aga ucu        uuuu guu c
     ug       u      u   g   auuuauuu    c   a 

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0010670

Mature sequence sja-bantam

• Accession: MIMAT0010177
• Sequence: 57 - ugagaucgcgauuaaagcuggu - 78
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:19107204 "Identification and characterization of novel microRNAs from Schistosoma japonicum" Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W PLoS One. 3:e4034(2008).
2. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).