Stem-loop sja-bantam

Accession

MI0010670

Description

Schistosoma japonicum sja-bantam precursor miRNA

Gene family

MIPF0000153; bantam

Literature search

15 open access papers mention sja-bantam
(145 sentences)

Sequence

aagucggcuuuuauugcgcucugagaaaaaccaauucauugcuuuuuuuauuuaucUGAGAUCGCGAUUAAAGCUGGUuu
...((((((((.((((((.(((.(((((((.(((....))).))))........))).))).)))))).))))))))...

Structure

aag        u      c   g   --------    c   u 
   ucggcuuu auugcg ucu aga        aaaa caa u
   |||||||| |||||| ||| |||        |||| |||  
   GGUCGAAA UAGCGC AGA Ucu        uuuu guu c
uuU        U      U   G   auuuauuu    c   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature sja-bantam

• Accession: MIMAT0010177
• Description: Schistosoma japonicum sja-bantam mature miRNA
• Sequence: 57 - UGAGAUCGCGAUUAAAGCUGGU - 78
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19107204
   Identification and characterization of novel microRNAs from Schistosoma japonicum
   Xue X, Sun J, Zhang Q, Wang Z, Huang Y, Pan W
   PLoS One (2008) 3:e4034


2. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596