Stem-loop pvu-MIR159a

Accession

MI0010700

Description

Phaseolus vulgaris pvu-MIR159a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

4 open access papers mention pvu-MIR159a
(15 sentences)

Sequence

guggagcuccuugaaguccaauugaggaucuuacuggguggauugagcugcuuagcuauggaucccacaguucuacccaucagcauguuuugugguagucuuguggCUUCCAUAUCUGGGGAGCUUCaucugccucuauaguaucauccuucUUUGGAUUGAAGGGAGCUCUAc
((((((((((((..(((((((..((((((..((((((((((((.(((((.(((((.((((((..((((((..(((((((...........)).)))))..))))))..)))))).))))).))))).))))))))....))))..))))))..)))))))..))))))))))))

Structure

            ga       uu      cu    ----        u     g     c      uc      uu     -  ucag 
guggagcuccuu  aguccaa  gaggau  uacu    ggguggau gagcu cuuag uaugga  ccacag  cuacc ca    c
||||||||||||  |||||||  ||||||  ||||    |||||||| ||||| ||||| ||||||  ||||||  ||||| ||    a
cAUCUCGAGGGA  UUAGGUU  uuccua  auga    uccgucua UUCGA GGGUC AUACCU  gguguu  gaugg gu    u
            AG       Uc      cu    uauc        C     G     U      UC      cu     u  uuug 

Annotation confidence Not enough data

Genome context

chr4: 43298214-43298387 [+]

Mature pvu-miR159a.2

• Accession: MIMAT0011170
• Description: Phaseolus vulgaris pvu-miR159a.2 mature miRNA
• Sequence: 107 - CUUCCAUAUCUGGGGAGCUUC - 127
• Evidence: experimental ; cloned [1]

Mature pvu-miR159a.1

• Accession: MIMAT0015301
• Description: Phaseolus vulgaris pvu-miR159a.1 mature miRNA
• Sequence: 153 - UUUGGAUUGAAGGGAGCUCUA - 173
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19353277
   Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
   "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
   "Plant Mol Biol (2009) 70:385-401