Stem-loop pvu-MIR319c

Accession

MI0010705

Description

Phaseolus vulgaris pvu-MIR319c precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

2 open access papers mention pvu-MIR319c
(16 sentences)

Sequence

gagagugaaggagcuucccucagcccauucauggauacaaaagauuggguugcaaaauuaaccacuaacucauucacacaauaguauucaguuagggugaugcucuuuuugcuauaauaugauugugugaaugaagugaugcauacauauugugugacccucuuucucugagcUUGGACUGAAGGGAGCUCCUUcuuucuguug
.((((.((((((((((((.((((.(((((((.(((.....((((..((((((((........((((...(((((((((((((.((((((((..(((((...)))))..)))....))))).)))))))))))))))))(((....)))....))))))))))))))).))))..))).)))).)))))))))))).))))....

Structure

---g    u            c    c   --    u   uacaa    uu        ------aaauuaac    aac             a     ----   uu     g 
    agag gaaggagcuucc ucag cca  uuca gga     aaga  ggguugca              cacu   ucauucacacaau guauu    cag  agggu  
    |||| |||||||||||| |||| |||  |||| |||     ||||  ||||||||              ||||   ||||||||||||| |||||    |||  ||||| a
    ucuu cUUCCUCGAGGG AGUC GGU  gagu ucu     uucu  cccagugu              guga   aguaaguguguua uauaa    guu  ucucg  
guug    u            A    A   Uc    c   -----    --        guuauacauacgua    ---             g     uauc   uu     u 

Annotation confidence Not enough data

Genome context

chr8: 49086396-49086599 [+]

Mature pvu-miR319c

• Accession: MIMAT0011176
• Description: Phaseolus vulgaris pvu-miR319c mature miRNA
• Sequence: 174 - UUGGACUGAAGGGAGCUCCUU - 194
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 19353277
   Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stress
   "Arenas-Huertero C, Perez B, Rabanal F, Blanco-Melo D, De la Rosa C, Estrada-Navarrete G, Sanchez F, Covarrubias AA, Reyes JL"
   "Plant Mol Biol (2009) 70:385-401